pathprint

DOI: 10.18129/B9.bioc.pathprint    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see pathprint.

Pathway fingerprinting for analysis of gene expression arrays

Bioconductor version: 3.8

Algorithms to convert a gene expression array provided as an expression table or a GEO reference to a 'pathway fingerprint', a vector of discrete ternary scores representing high (1), low(-1) or insignificant (0) expression in a suite of pathways.

Author: Gabriel Altschuler, Sokratis Kariotis

Maintainer: Sokratis Kariotis <s.kariotis at sheffield.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("pathprint")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathprint")

 

PDF	R Script	pathprint
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, KEGG, Reactome, Software, Transcription
Version	1.12.0
In Bioconductor since	BioC 3.5 (R-3.4) (2 years)
License	GPL
Depends	R (>= 3.4)
Imports	stats, utils
LinkingTo
Suggests	ALL, GEOquery, pathprintGEOData, SummarizedExperiment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	pathprintGEOData
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pathprint_1.12.0.tar.gz
Windows Binary	pathprint_1.12.0.zip
Mac OS X 10.11 (El Capitan)	pathprint_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pathprint
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pathprint
Package Short Url	http://bioconductor.org/packages/pathprint/
Package Downloads Report	Download Stats