motifRG

DOI: 10.18129/B9.bioc.motifRG    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see motifRG.

A package for discriminative motif discovery, designed for high throughput sequencing dataset

Bioconductor version: 3.8

Tools for discriminative motif discovery using regression methods

Author: Zizhen Yao

Maintainer: Zizhen Yao <yzizhen at fhcrc.org>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("motifRG")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("motifRG")

 

PDF	R Script	motifRG: regression-based discriminative motif discovery
PDF		Reference Manual

Details

biocViews	MotifDiscovery, Software, Transcription
Version	1.26.0
In Bioconductor since	BioC 2.10 (R-2.15) (7 years)
License	Artistic-2.0
Depends	R (>= 2.15), Biostrings(>= 2.26), IRanges, seqLogo, parallel, methods, grid, graphics, BSgenome, XVector, BSgenome.Hsapiens.UCSC.hg19
Imports	Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics, XVector
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	RCAS
Imports Me
Suggests Me	universalmotif
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	motifRG_1.26.0.tar.gz
Windows Binary	motifRG_1.26.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	motifRG_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/motifRG
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/motifRG
Package Short Url	http://bioconductor.org/packages/motifRG/
Package Downloads Report	Download Stats