beadarraySNP

DOI: 10.18129/B9.bioc.beadarraySNP    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see beadarraySNP.

Normalization and reporting of Illumina SNP bead arrays

Bioconductor version: 3.8

Importing data from Illumina SNP experiments and performing copy number calculations and reports.

Author: Jan Oosting

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("beadarraySNP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beadarraySNP")

 

PDF	R Script	beadarraySNP.pdf
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel
Version	1.48.0
In Bioconductor since	BioC 1.9 (R-2.4) (12.5 years)
License	GPL-2
Depends	methods, Biobase(>= 2.14), quantsmooth
Imports
LinkingTo
Suggests	aCGH, affy, limma, snapCGH, beadarray, DNAcopy
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	beadarraySNP_1.48.0.tar.gz
Windows Binary	beadarraySNP_1.48.0.zip
Mac OS X 10.11 (El Capitan)	beadarraySNP_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/beadarraySNP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/beadarraySNP
Package Short Url	http://bioconductor.org/packages/beadarraySNP/
Package Downloads Report	Download Stats