beachmat

DOI: 10.18129/B9.bioc.beachmat    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see beachmat.

Compiling Bioconductor to Handle Each Matrix Type

Bioconductor version: 3.8

Provides a consistent C++ class interface for a variety of commonly used matrix types, including sparse and HDF5-backed matrices.

Author: Aaron Lun [aut, cre], Hervé Pagès [aut], Mike Smith [aut]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("beachmat")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beachmat")

 

HTML	R Script	1. Linking to beachmat from another package
HTML	R Script	2. Reading data from R matrices in C++
HTML	R Script	3. Writing data into R matrix objects
HTML	R Script	4. Supporting arbitrary matrix classes
HTML	R Script	5. Using beachmat's helper functions
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, DataRepresentation, Infrastructure, Software
Version	1.4.0
In Bioconductor since	BioC 3.6 (R-3.4) (1.5 years)
License	GPL-3
Depends	R (>= 3.5)
Imports	utils, methods, Rhdf5lib(>= 1.1.4), rhdf5, HDF5Array(>= 1.9.5), DelayedArray(>= 0.7.38), Rcpp (>= 0.12.14), BiocGenerics
LinkingTo	Rcpp, Rhdf5lib
Suggests	testthat, BiocStyle, knitr, rmarkdown, Matrix, devtools
SystemRequirements	C++11
Enhances
URL
Depends On Me
Imports Me
Suggests Me	bsseq, DropletUtils, scater, scran
Links To Me	bsseq, DropletUtils, scater, scran
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	beachmat_1.4.0.tar.gz
Windows Binary	beachmat_1.4.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	beachmat_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/beachmat
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/beachmat
Package Short Url	http://bioconductor.org/packages/beachmat/
Package Downloads Report	Download Stats