bayNorm

DOI: 10.18129/B9.bioc.bayNorm    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see bayNorm.

Single-cell RNA sequencing data normalization

Bioconductor version: 3.8

bayNorm is used for normalizing single-cell RNA-seq data.

Author: Wenhao Tang [aut, cre], Fran<U+00E7>ois Bertaux [aut], Philipp Thomas [aut], Claire Stefanelli [aut], Malika Saint [aut], Samuel Marguerat [aut], Vahid Shahrezaei [aut]

Maintainer: Wenhao Tang <wt215 at ic.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("bayNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("bayNorm")

 

HTML	R Script	Introduction to bayNorm
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, Normalization, RNASeq, Sequencing, SingleCell, Software
Version	1.0.9
In Bioconductor since	BioC 3.8 (R-3.5) (0.5 years)
License	GPL (>= 2)
Depends	R (>= 3.5)
Imports	Rcpp (>= 0.12.12), BB, foreach, iterators, doSNOW, parallel, MASS, locfit, fitdistrplus, stats, methods, graphics, grDevices, SingleCellExperiment, SummarizedExperiment, BiocParallel, utils
LinkingTo	Rcpp, RcppArmadillo, RcppProgress
Suggests	knitr, rmarkdown, BiocStyle, devtools, testthat
SystemRequirements
Enhances
URL	https://github.com/WT215/bayNorm
BugReports	https://github.com/WT215/bayNorm/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	bayNorm_1.0.9.tar.gz
Windows Binary	bayNorm_1.0.9.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	bayNorm_1.0.9.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bayNorm
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bayNorm
Package Short Url	http://bioconductor.org/packages/bayNorm/
Package Downloads Report	Download Stats