SANTA

DOI: 10.18129/B9.bioc.SANTA    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see SANTA.

Spatial Analysis of Network Associations

Bioconductor version: 3.8

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Author: Alex J. Cornish and Florian Markowetz

Maintainer: Alex J. Cornish <a.cornish12 at imperial.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("SANTA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SANTA")

 

HTML	R Script	Introduction to SANTA
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, Network, NetworkEnrichment, Software
Version	2.20.0
In Bioconductor since	BioC 2.12 (R-3.0) (6 years)
License	GPL (>= 2)
Depends	R (>= 2.14), igraph
Imports	Matrix, snow
LinkingTo
Suggests	RUnit, BiocGenerics, knitr, knitcitations, formatR, org.Sc.sgd.db, BioNet, DLBCL, msm
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SANTA_2.20.0.tar.gz
Windows Binary	SANTA_2.20.0.zip
Mac OS X 10.11 (El Capitan)	SANTA_2.20.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SANTA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SANTA
Package Short Url	http://bioconductor.org/packages/SANTA/
Package Downloads Report	Download Stats