RCyjs

DOI: 10.18129/B9.bioc.RCyjs    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see RCyjs.

Display and manipulate graphs in cytoscape.js

Bioconductor version: 3.8

Interactive viewing and exploration of graphs, connecting R to Cytoscape.js, using websockets.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("RCyjs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RCyjs")

 

PDF	R Script	"RCyjs: programmatic access to the web browser-based network viewer, cytoscape.js"
HTML	R Script	RCyjs: programmatic access to the web browser-based network viewer, cytoscape.js
PDF		Reference Manual
Text		README
Text		NEWS
Text		LICENSE

Details

biocViews	GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version	2.4.0
In Bioconductor since	BioC 3.1 (R-3.2) (4 years)
License	MIT + file LICENSE
Depends	R (>= 3.5.0), BrowserViz(>= 2.0.0), graph(>= 1.56.0)
Imports	methods, httpuv (>= 1.4.0), BiocGenerics, base64enc, utils
LinkingTo
Suggests	RUnit, BiocStyle, RefNet, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RCyjs_2.4.0.tar.gz
Windows Binary	RCyjs_2.4.0.zip
Mac OS X 10.11 (El Capitan)	RCyjs_2.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RCyjs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RCyjs
Package Short Url	http://bioconductor.org/packages/RCyjs/
Package Downloads Report	Download Stats