ProteomicsAnnotationHubData

DOI: 10.18129/B9.bioc.ProteomicsAnnotationHubData    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see ProteomicsAnnotationHubData.

Transform public proteomics data resources into Bioconductor Data Structures

Bioconductor version: 3.8

These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.

Author: Gatto Laurent [aut, cre], Sonali Arora [aut]

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("ProteomicsAnnotationHubData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ProteomicsAnnotationHubData")

 

HTML	R Script	Proteomics Data in Annotation Hub
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Proteomics, Software
Version	1.12.0
In Bioconductor since	BioC 3.2 (R-3.2) (3.5 years)
License	Artistic-2.0
Depends	AnnotationHub(>= 2.1.45), AnnotationHubData
Imports	mzR(>= 2.3.2), MSnbase, Biostrings, GenomeInfoDb, utils, Biobase, BiocManager, RCurl
LinkingTo
Suggests	knitr, BiocStyle, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/lgatto/ProteomicsAnnotationHubData
BugReports	https://github.com/lgatto/ProteomicsAnnotationHubData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ProteomicsAnnotationHubData_1.12.0.tar.gz
Windows Binary	ProteomicsAnnotationHubData_1.12.0.zip
Mac OS X 10.11 (El Capitan)	ProteomicsAnnotationHubData_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ProteomicsAnnotationHubData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ProteomicsAnnotationHubData
Package Short Url	http://bioconductor.org/packages/ProteomicsAnnotationHubData/
Package Downloads Report	Download Stats