MCRestimate

DOI: 10.18129/B9.bioc.MCRestimate    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see MCRestimate.

Misclassification error estimation with cross-validation

Bioconductor version: 3.8

This package includes a function for combining preprocessing and classification methods to calculate misclassification errors

Author: Marc Johannes, Markus Ruschhaupt, Holger Froehlich, Ulrich Mansmann, Andreas Buness, Patrick Warnat, Wolfgang Huber, Axel Benner, Tim Beissbarth

Maintainer: Marc Johannes <m.johannes at dkfz.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MCRestimate")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MCRestimate")

 

PDF	R Script	HOW TO use MCRestimate
PDF		Reference Manual

Details

biocViews	Classification, Software
Version	2.38.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14 years)
License	GPL (>= 2)
Depends	R (>= 2.7.2), golubEsets(>= 1.4.6)
Imports	e1071 (>= 1.5-12), pamr (>= 1.22), randomForest (>= 3.9-6), RColorBrewer (>= 0.1-3), Biobase(>= 2.5.5), graphics, grDevices, stats, utils
LinkingTo
Suggests	xtable (>= 1.2-1), ROC(>= 1.8.0), genefilter(>= 1.12.0), gpls(>= 1.6.0)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MCRestimate_2.38.0.tar.gz
Windows Binary	MCRestimate_2.38.0.zip
Mac OS X 10.11 (El Capitan)	MCRestimate_2.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MCRestimate
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MCRestimate
Package Short Url	http://bioconductor.org/packages/MCRestimate/
Package Downloads Report	Download Stats