Guitar

DOI: 10.18129/B9.bioc.Guitar    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see Guitar.

Guitar

Bioconductor version: 3.8

The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

Author: Jia Meng

Maintainer: Jia Meng <jia.meng at xjtlu.edu.cn>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("Guitar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Guitar")

 

PDF	R Script	Sample Guitar workflow
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, Coverage, DataImport, ImmunoOncology, MethylSeq, QualityControl, RNASeq, Sequencing, Software, SplicedAlignment, Transcription
Version	1.20.1
In Bioconductor since	BioC 3.2 (R-3.2) (3.5 years)
License	GPL-2
Depends	Rsamtools, GenomicFeatures, rtracklayer, GenomicAlignments, GenomicRanges, ggplot2, grid, IRanges
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Guitar_1.20.1.tar.gz
Windows Binary	Guitar_1.20.1.zip
Mac OS X 10.11 (El Capitan)	Guitar_1.20.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Guitar
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Guitar
Package Short Url	http://bioconductor.org/packages/Guitar/
Package Downloads Report	Download Stats