DEFormats

DOI: 10.18129/B9.bioc.DEFormats    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see DEFormats.

Differential gene expression data formats converter

Bioconductor version: 3.8

Convert between different data formats used by differential gene expression analysis tools.

Author: Andrzej Oleś

Maintainer: Andrzej Oleś <andrzej.oles at embl.de>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("DEFormats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEFormats")

 

HTML	R Script	Differential gene expression data formats converter
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version	1.10.1
In Bioconductor since	BioC 3.3 (R-3.3) (3 years)
License	GPL-3
Depends
Imports	checkmate, data.table, DESeq2, edgeR(>= 3.13.4), GenomicRanges, methods, S4Vectors, stats, SummarizedExperiment
LinkingTo
Suggests	BiocStyle(>= 1.8.0), knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/aoles/DEFormats
BugReports	https://github.com/aoles/DEFormats/issues
Depends On Me
Imports Me	regionReport
Suggests Me	ideal
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DEFormats_1.10.1.tar.gz
Windows Binary	DEFormats_1.10.1.zip
Mac OS X 10.11 (El Capitan)	DEFormats_1.10.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DEFormats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DEFormats
Package Short Url	http://bioconductor.org/packages/DEFormats/
Package Downloads Report	Download Stats