CancerSubtypes

DOI: 10.18129/B9.bioc.CancerSubtypes    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see CancerSubtypes.

Cancer subtypes identification, validation and visualization based on multiple genomic data sets

Bioconductor version: 3.8

CancerSubtypes integrates the current common computational biology methods for cancer subtypes identification and provides a standardized framework for cancer subtype analysis based multi-omics data, such as gene expression, miRNA expression, DNA methylation and others.

Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>

Maintainer: Taosheng Xu<taosheng.x at gmail.com>

Installation

To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("CancerSubtypes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CancerSubtypes")

 

HTML	R Script	CancerSubtypes
PDF		Reference Manual
Text		NEWS

Details

biocViews	Clustering, GeneExpression, Software, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.4 (R-3.3) (2.5 years)
License	GPL (>= 2)
Depends	R (>= 3.4), sigclust, NMF
Imports	SNFtool, iCluster, cluster, impute, limma, ConsensusClusterPlus, grDevices, survival
LinkingTo
Suggests	BiocGenerics, RUnit, knitr, RTCGA.mRNA, RTCGA.clinical
SystemRequirements
Enhances
URL	https://github.com/taoshengxu/CancerSubtypes
BugReports	https://github.com/taoshengxu/CancerSubtypes/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CancerSubtypes_1.8.0.tar.gz
Windows Binary	CancerSubtypes_1.8.0.zip
Mac OS X 10.11 (El Capitan)	CancerSubtypes_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CancerSubtypes
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CancerSubtypes
Package Short Url	http://bioconductor.org/packages/CancerSubtypes/
Package Downloads Report	Download Stats