summarizeToGene {tximeta} | R Documentation |
This function uses the tximport package to summarize counts, abundances and effective lengths from transcript-level to gene-level. It automatically will access the relevant TxDb (by either finding it in the BiocFileCache or by building it from an ftp location).
summarizeToGene(se, varReduce = FALSE, ...)
se |
a SummarizedExperiment produced by |
varReduce |
whether to reduce per-sample inferential replicates
information into a matrix of sample variances |
... |
arguments passed to |
a SummarizedExperiment with summarized quantifications
example(tximeta) gse <- summarizeToGene(se)