siggenes2excel {siggenes} | R Documentation |
Generates a csv file for either a SAM or an EBAM object for the use in Excel. This csv file can contain general information as the number of differentially expressed genes and the estimated FDR, and gene-specific information on the differentially expressed genes.
sam2excel(object, delta, file, excel.version=1, n.digits = 3, what = "both", entrez = FALSE, chip = "", quote = FALSE) ebam2excel(object, delta, file, excel.version=1, n.digits = 4, what = "both", entrez = FALSE, chip = "", quote = FALSE)
object |
either a SAM or an EBAM object. |
delta |
a numerical value specifying the Delta value. |
file |
character string naming the file in which the output should be stored. Must have the suffix ".csv". |
excel.version |
either |
n.digits |
integer specifying the number of decimal places used in the output. |
what |
either |
entrez |
logical indicating if both the Entrez links and the symbols of the genes will be added to the output. |
chip |
character string naming the chip type used in this analysis. Must
be specified as in the meta-data section of Bioconductor (e.g., |
quote |
logical indicating if character strings and factors should be surrounded by
double quotes. For details see |
Holger Schwender, holger.schw@gmx.de
sam
, sam2html
, ebam
, ebam2html