inferSexKaryotypes {sesame}R Documentation

Infer Sex Karyotype

Description

The function takes a SigSet and infers the sex chromosome Karyotype and presence/absence of X-chromosome inactivation (XCI). chrX, chrY and XCI are inferred relatively independently. This function gives a more detailed look of potential sex chromosome aberrations.

Usage

inferSexKaryotypes(sset)

Arguments

sset

a SigSet

Value

Karyotype string, with XCI

Examples

sset <- sesameDataGet('EPIC.1.LNCaP')$sset
inferSexKaryotypes(sset)

[Package sesame version 1.0.0 Index]