getProbesByRegion {sesame}R Documentation

Get probes by genomic region

Description

The function takes a genomic coordinate and output the a vector of probes on the specified platform that falls in the given genomic region.

Usage

getProbesByRegion(chrm, beg = 1, end = -1, platform = c("EPIC",
  "HM450"), refversion = c("hg38", "hg19"))

Arguments

chrm

chromosome

beg

begin, 1 if omitted

end

end, chromosome end if omitted

platform

EPIC or HM450

refversion

hg38 or hg19

Value

probes that fall into the given region

Examples

getProbesByRegion('chr5', 135413937, 135419936,
    refversion = 'hg19', platform = 'HM450')

[Package sesame version 1.0.0 Index]