SignalSet {sesame}R Documentation

SignalSet class

Description

SignalSet class

Usage

SignalSet

Format

An R6Class object.

Value

Object of class SignalSet

Fields

platform

platform name, supports "EPIC", "HM450" and "HM27"

IG

intensity table for type I probes in green channel

IR

intensity table for type I probes in red channel

II

intensity table for type II probes

oobG

out-of-band probes in green channel

oobR

out-of-band probes in red channel

ctl

all the control probe intensities

pval

named numeric vector of p-values

mask

probe mask

Documentation

For full documentation of each method go to

new(platform)

Create a SignalSet in the specified platform

detectPValue()

Detect P-value for each probe

toM()

Convert to M values

totalIntensities()

Total intensity on each probe

Examples

SignalSet$new("EPIC")

[Package sesame version 1.0.0 Index]