sesamize {sesame} | R Documentation |
"fix" an RGset (for which IDATs may be unavailable) with Sesame
sesamize(x, naFrac = 1, parallel = FALSE)
x |
an RGChannelSet, perhaps with colData of various flavors |
naFrac |
maximum NA fraction for a probe before it gets dropped (1) |
parallel |
attempt to run in parallel? (This is a bad idea on laptops) |
a sesamized GenomicRatioSet from the input RGChannelSet
# Takes about two minutes to process 48 samples on my 48-core desktop if (require(FlowSorted.CordBloodNorway.450k)) { sesamized <- sesamize( FlowSorted.CordBloodNorway.450k[,1:2]) }