getBetas {sesame}R Documentation

Get beta Values

Description

Get beta Values

Usage

getBetas(sset, quality.mask = TRUE, nondetection.mask = TRUE,
  mask.use.tcga = FALSE, pval.threshold = 0.05)

Arguments

sset

SigSet

quality.mask

whether to mask low quality probes

nondetection.mask

whether to mask nondetection

mask.use.tcga

whether to use TCGA masking, only applies to HM450

pval.threshold

p-value threshold for nondetection mask

Value

a numeric vector, beta values

Examples

sset <- sesameDataGet('EPIC.1.LNCaP')$sset
betas <- getBetas(sset)

[Package sesame version 1.0.0 Index]