SigSet-class {sesame}R Documentation

SigSet class

Description

This is the main data class for SeSAMe. The class holds different classes of signal intensities.

The function takes a string describing the platform of the data. It can be one of "HM27", "HM450" or "EPIC".

The function takes a string describing the platform of the data. It can be one of "HM27", "HM450" or "EPIC".

Usage

## S4 method for signature 'SigSet'
initialize(.Object, platform = c("EPIC", "HM450",
  "HM27"), ...)

SigSet(...)

Arguments

.Object

target object

platform

"EPIC", "HM450" or "HM27"

...

additional arguments

Value

a SigSet object

a SigSet object

Slots

IG

intensity table for type I probes in green channel

IR

intensity table for type I probes in red channel

II

intensity table for type II probes

oobG

out-of-band probes in green channel

oobR

out-of-band probes in red channel

ctl

all the control probe intensities

pval

named numeric vector of p-values

platform

"EPIC", "HM450" or "HM27"

Examples

## Create an empty EPIC object.
SigSet("EPIC")
SigSet('EPIC')

[Package sesame version 1.0.0 Index]