getBetas {sesame} | R Documentation |
Get beta Values
getBetas(sset, quality.mask = TRUE, nondetection.mask = TRUE, mask.use.tcga = FALSE, pval.threshold = 0.05)
sset |
|
quality.mask |
whether to mask low quality probes |
nondetection.mask |
whether to mask nondetection |
mask.use.tcga |
whether to use TCGA masking, only applies to HM450 |
pval.threshold |
p-value threshold for nondetection mask |
a numeric vector, beta values
sset <- sesameDataGet('EPIC.1.LNCaP')$sset betas <- getBetas(sset)