sesamize {sesame}R Documentation

"fix" an RGset (for which IDATs may be unavailable) with Sesame

Description

"fix" an RGset (for which IDATs may be unavailable) with Sesame

Usage

sesamize(x, naFrac = 1, parallel = FALSE)

Arguments

x

an RGChannelSet, perhaps with colData of various flavors

naFrac

maximum NA fraction for a probe before it gets dropped (1)

parallel

attempt to run in parallel? (This is a bad idea on laptops)

Value

a sesamized GenomicRatioSet from the input RGChannelSet

Examples


# Takes about two minutes to process 48 samples on my 48-core desktop
if (require(FlowSorted.CordBloodNorway.450k)) {
    sesamized <- sesamize(
        FlowSorted.CordBloodNorway.450k[,1:2])
} 


[Package sesame version 1.0.0 Index]