read_profiles {seqCAT}R Documentation

Read SNV profiles

Description

Read SNV profiles in a directory.

Usage

read_profiles(profile_dir, remove_mt = TRUE)

Arguments

profile_dir

The directory containing the profiles to be read (path).

remove_mt

Remove or keep mitochondrial variants (boolean).

Details

This is a wrapper function for reading multiple SNV profiles present in a directory (and its sub-directories in recursive mode).

Value

A list of GRanges objects.

Examples

# Path to test data
profile_dir = system.file("extdata",
                          package = "seqCAT")

# Read test profiles
profile_list <- read_profiles(profile_dir)

[Package seqCAT version 1.4.1 Index]