scater-plot-args {scater} | R Documentation |
scater functions that plot points share a number of visualization parameters, which are described on this page.
add_legend
:Logical scalar, specifying whether a legend should be shown. Defaults to TRUE.
theme_size
:Integer scalar, specifying the font size. Defaults to 10.
point_alpha
:Numeric scalar in [0, 1], specifying the transparency. Defaults to 0.6.
point_size
:Numeric scalar, specifying the size of the points.
Defaults to NULL
.
jitter_type
:String to define how points are to be jittered in a violin plot.
This is either with random jitter on the x-axis ("jitter"
) or in a “beeswarm” style (if "swarm"
, default).
The latter usually looks more attractive, but for datasets with a large number of cells, or for dense plots, the jitter option may work better.
show_median
:Logical, should the median of the distribution be shown for violin plots?
Defaults to FALSE
.
show_violin
:Logical, should the outline of a violin plot be shown?
Defaults to TRUE
.
show_smooth
:Logical, should a smoother be fitted to a scatter plot?
Defaults to FALSE
.
show_se
:Logical, should standard errors for the fitted line be shown on a scatter plot when show_smooth=TRUE
?
Defaults to TRUE
.
plotColData
,
plotRowData
,
plotReducedDim
,
plotExpression
,
plotPlatePosition
,
and most other plotting functions.