logoContext {riboSeqR}R Documentation

Produces a motif of coding start context

Description

The findCDS function reports the immediate context of coding start. This function uses the 'seqLogo' package to produce a motif of the contexts reported.

Usage

logoContext(cds, ...)

Arguments

cds

A GRanges object containing a '$context' value which defines the 7 bases defining coding start context.

...

Other values to be passed to the seqLogo function.

Value

A matrix containing counts of the different bases observed at each position of the 7-base context.

Author(s)

Thomas J. Hardcastle


[Package riboSeqR version 1.16.0 Index]