createBiopax {rBiopaxParser}R Documentation

This function creates a new Biopax model from scratch

Description

This function creates a new Biopax model from scratch. This is not necessary if you want to parse a BioPAX export from a file, please see: readBiopax. Returns a biopax model, which is a list with named elements:

df

The data.frame representing the biopax in R

ns_rdf

RDF Namespace

ns_owl

OWL Namespace

ns_bp

Biopax Namespace

file

NULL

Usage

createBiopax(level = 3)

Arguments

level

integer. Specifies the BioPAX level.

Value

A biopax model

Author(s)

Frank Kramer

Examples

 biopax = createBiopax(level=2)


[Package rBiopaxParser version 2.22.0 Index]