flowPlate {plateCore} | R Documentation |
Constructor for a flowPlate
object. sampleNames
for the flowSet
should match the Well.Id column of wellAnnotation
. Well.Ids must be unique to sampleNames
,
which is usually ensured by using the 3 character designations for wells (e.g. "A01","A02",...,"H12").
flowPlate(data,wellAnnotation,plateName,...)
data |
|
wellAnnotation |
|
plateName |
Name of the |
... |
optional arguments |
Returns a flowPate
object.
Errol Strain
library(plateCore) data(plateCore) ## Get the lymphocytes rectGate <- rectangleGate("FSC-H"=c(300,700),"SSC-H"=c(50,400)) pbmcPlate <- Subset(pbmcPlate, rectGate) ## Create a flowPlate object from the platePBMC and the wellAnnotation fp <- flowPlate(pbmcPlate,wellAnnotation,plateName="P1") ## Subset the flowPlate, creating another flowPlate fpSmall <- fp["A01"] ## Extract a flowFrame from a flowPlate ff <-fp[["A01"]] ## Retrieve sample names from flowPlate sampNames <- sampleNames(fp) ## Retrieve the annotatedDataFrame describing the flowPlate adf <- phenoData(fp)