convertSifToGmt {paxtoolsr} | R Documentation |
Convert SIF to GMT
convertSifToGmt(sif, name = "gmt", returnSmallMolecules = FALSE)
sif |
a data.frame representing a SIF (Simple Interaction Format) |
name |
the name of the gene set |
returnSmallMolecules |
a boolean whether to return genes or small molecules in the gene set |
a list with one entry being a vector
sif <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr")) gmt <- convertSifToGmt(sif)