subnetwork {pandaR} | R Documentation |
subnetwork gets a bipartite network containing only the transcription factors or genes and their respective connections
subnetwork(x, nodes, subTf = TRUE)
x |
an object of class "panda" |
nodes |
character vector containing the transcription factor or gene labels to subset |
subTf |
an optional logical indicating whether to subset by transcription factor. Default is TRUE. |
An matrix describing the subsetted bipartite network.
data(pandaToyData) pandaRes <- panda(pandaToyData$motif, pandaToyData$expression,pandaToyData$ppi,hamming=.001,progress=TRUE) topPandaRes <- topedges(pandaRes,1000) subnet.pandaRes <- subnetwork(topPandaRes,c("AR","ARID3A","ELK1")) data(pandaResult) topPandaRes <- topedges(pandaResult,1000) subnetwork(topPandaRes,c("AR","ARID3A","ELK1"))