oligoSet {oligoClasses}R Documentation

An example instance of oligoSnpSet class

Description

An example instance of the oligoSnpSet class

Usage

data(oligoSetExample)

Source

Created from the simulated locusLevelData provided in this package.

See Also

locusLevelData

Examples

	## Not run: 
		## 'oligoSetExample' created by the following
		data(locusLevelData)
		oligoSet <- new("oligoSnpSet",
				copyNumber=integerMatrix(log2(locusLevelData[["copynumber"]]/100), 100),
				call=locusLevelData[["genotypes"]],
				callProbability=locusLevelData[["crlmmConfidence"]],
				annotation=locusLevelData[["platform"]],
				genome="hg19")
		oligoSet <- oligoSet[!is.na(chromosome(oligoSet)), ]
		oligoSet <- oligoSet[chromosome(oligoSet) < 3, ]
	
## End(Not run)
	data(oligoSetExample)
	oligoSet

[Package oligoClasses version 1.44.0 Index]