SummarizedExperiment-methods {oligoClasses} | R Documentation |
Methods for RangedSummarizedExperiment.
## S4 method for signature 'RangedSummarizedExperiment' baf(object) ## S4 method for signature 'RangedSummarizedExperiment' chromosome(object,...) ## S4 method for signature 'RangedSummarizedExperiment' isSnp(object, ...) ## S4 method for signature 'RangedSummarizedExperiment' lrr(object)
object |
A RangedSummarizedExperiment object. |
... |
ignored |
baf
and lrr
are accessors for the B allele
frequencies and log R ratio assays (matrices or arrays), respectively,
chromosome
returns the seqnames
of the rowRanges
.
isSnp
returns a logical vector for each marker in
rowRanges
indicating whether the marker targets a SNP
(nonpolymorphic regions are FALSE).