list.responses.factor {netresponse} | R Documentation |
List significantly associated responses for all factors and levels in the given annotation matrix
list.responses.factor(annotation.df, models, method = "hypergeometric", min.size = 2, qth = Inf, verbose = TRUE, data = NULL, rounding = NULL)
annotation.df |
annotation data.frame with discrete factor levels, rows named by the samples |
models |
List of models. Each model should have a sample-cluster assignment matrix qofz, or a vector of cluster indices named by the samples. |
method |
method for enrichment calculation |
min.size |
minimum sample size for a response |
qth |
q-value threshold |
verbose |
verbose |
data |
data (samples x features; or a vector in univariate case) |
rounding |
rounding digits |
Table listing all associations between the factor levels and responses
Contact: Leo Lahti leo.lahti@iki.fi
See citation("netresponse")