getMiRNASequence {miRBaseConverter} | R Documentation |
This function returns the miRNA sequences for a list of miRNAs.
getMiRNASequence(Accessions, targetVersion = "v22")
Accessions |
A character vector representing the miRNA Accessions in miRBase. |
targetVersion |
A character value representing the target miRBase version corresponding the Accessions.
Users can apply the function getAllVersionInfo() to get the available miRNA version names.
The optional values are in below: |
A nx2 data frame. The number of row equals to input miRNAs. The two columns are defined as below:
Accession : The original miRNA (Column 1).
miRNASequence_{targetVersion} : The return miRNA sequence (in specified version) corresponding to the input miRNAs (Column 2).
Xu, Taosheng taosheng.x@gmail.com
#####1, The input are miRNA Accessions data(miRNATest) Accessions=miRNATest$Accession result1=getMiRNASequence(Accessions,targetVersion="v13") result2=getMiRNASequence(Accessions,targetVersion="v22") #####2, The input are miRNA Names data(miRNATest) miRNANames=miRNATest$miRNA_Name result3=miRNAVersionConvert(miRNANames,targetVersion="v22",exact=TRUE) Accessions=result3$Accession result4=getMiRNASequence(Accessions,targetVersion="v22")