mergePermutationAndObservation {methylInheritance} | R Documentation |
Merge the permutation results with the observation results.
The merging is only needed when permutation and observation have been
processed separately. The returned value is a
methylInheritanceAllResults
object that can be used by
the extractInfo
function.
mergePermutationAndObservation(permutationResults, observationResults)
permutationResults |
a |
observationResults |
a |
a list
of class methylInheritanceAllResults
with
2 entries. The 2 entries are:
PERMUTATION
list
with a number of entries corresponding
to the number of permutations that have been processed. Each entry contains
the result of one permutation.The elements in each entry are:
SITES
Only present when a sites analysis has been achieved,
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
, the number of conserved
hyper differentially methylated sites between two consecutive generations.
The first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations; etc.
HYPO
a list
of integer
, the number of conserved
hypo differentially methylated sites between two consecutive generations.The
first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations; etc.
iAll
a list
containing:
HYPER
a list
of integer
, the number of conserved
hyper differentially methylated sites between three or more consecutive
generations. The first element represents the intersection of the first
three generations; the second element, the intersection of the first fourth
generations; etc.The number of entries depends on the number
of generations.
HYPO
a list
of integer
, the number of conserved
hypo differentially methylated sites between three or more consecutive
generations. The first element represents the intersection of the first
three generations; the second element, the intersection of the first fourth
generations; etc. The number of entries depends on the number of
generations.
TILES
Only present when a tiles analysis has been achieved,
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
, the number of conserved
hyper differentially methylated positions between two consecutive
generations. The first element represents the intersection of the
first and second generations; the second element, the intersection of
the second and third generations; etc.
HYPO
a list
of integer
, the number of conserved
hypo differentially methylated positions between two consecutive
generations.The first element represents the intersection of the first and
second generations; the second element, the intersection of the second
and third generations; etc.
iAll
a list
containing:
HYPER
a list
of integer
, the number of conserved
hyper differentially methylated positions between three or more consecutive
generations. The first element represents the intersection of the first
three generations; the second element, the intersection of the first fourth
generations; etc. The number of entries depends on the number
of generations.
HYPO
a list
of integer
, the number of conserved
hypo differentially methylated positions between three or more consecutive
generations. The first element represents the intersection of the first
three generations; the second element, the intersection of the first fourth
generations; etc.The number of entries depends on the number of
generations.
OBSERVATION
a list
containing
the result obtained with the observed dataset (not shuffled). The
elements are:
SITES
Only present when a sites analysis has been achieved,
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
, the number of conserved
hyper differentially methylated sites between two consecutive generations.
The first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations; etc.
HYPO
a list
of integer
, the number of conserved
hypo differentially methylated sites between two consecutive generations.The
first element represents the intersection of the first and second
generations; the second element, the intersection of the second and third
generations; etc.
iAll
a list
containing:
HYPER
a list
of integer
, the number of conserved
hyper differentially methylated sites between three or more consecutive
generations. The first element represents the intersection of the first
three generations; the second element, the intersection of the first fourth
generations; etc.The number of entries depends on the number
of generations.
HYPO
a list
of integer
, the number of conserved
hypo differentially methylated sites between three or more consecutive
generations. The first element represents the intersection of the first
three generations; the second element, the intersection of the first fourth
generations; etc. The number of entries depends on the number of
generations.
TILES
Only present when a tiles analysis has been achieved,
a list
containing:
i2
a list
containing:
HYPER
a list
of integer
, the number of conserved
hyper differentially methylated positions between two consecutive
generations. The first element represents the intersection of the
first and second generations; the second element, the intersection of
the second and third generations; etc.
HYPO
a list
of integer
, the number of conserved
hypo differentially methylated positions between two consecutive
generations.The first element represents the intersection of the first and
second generations; the second element, the intersection of the second
and third generations; etc.
iAll
a list
containing:
HYPER
a list
of integer
, the number of conserved
hyper differentially methylated positions between three or more consecutive
generations. The first element represents the intersection of the first
three generations; the second element, the intersection of the first fourth
generations; etc. The number of entries depends on the number
of generations.
HYPO
a list
of integer
, the number of conserved
hypo differentially methylated positions between three or more consecutive
generations. The first element represents the intersection of the first
three generations; the second element, the intersection of the first fourth
generations; etc.The number of entries depends on the number of
generations.
Astrid Deschenes, Pascal Belleau
## Create a observation result observed <- list() observed[["OBSERVATION"]] <- list() observed[["OBSERVATION"]][["SITES"]] <- list() observed[["OBSERVATION"]][["SITES"]][["i2"]] <- list(HYPER = list(11, 10), HYPO = list(13, 12)) observed[["OBSERVATION"]][["SITES"]][["iAll"]] <- list(HYPER = list(1), HYPO = list(3)) ## Create a permutation result containing only 1 permutation result ## Real perumtations results would have more entries permutated <- list() permutated[["PERMUTATION"]] <- list() permutated[["PERMUTATION"]][[1]] <- list() permutated[["PERMUTATION"]][[1]][["SITES"]] <- list() permutated[["PERMUTATION"]][[1]][["SITES"]][["i2"]] <- list(HYPER = list(11, 12), HYPO = list(8, 11)) permutated[["PERMUTATION"]][[1]][["SITES"]][["iAll"]] <- list(HYPER = list(0), HYPO = list(1)) ## Merge permutation and observation results mergePermutationAndObservation(permutationResults = permutated, observationResults = observed)