samplesForTransgenerationalAnalysis {methylInheritance} | R Documentation |
methylKit
, in a
methylRawList
format (for demo purpose).The object is a list
with 3 entries. Each entry corresponds to the
information for one generation (first entry = first generation, etc..)
stored in a methylRawList
.
There are 12 samples (6 controls and 6 cases) for each generation. Each
sample information is stored in a methylRaw
object.
data(samplesForTransgenerationalAnalysis)
A list
containing three methylRawList
objects. Each
methylRawList
contains the information for one generation
(first entry = first generation, etc..). Each sample information is
stored in a methylRaw
object. There is methylRaw
objects
(6 controls and 6 cases) in each generation.
This dataset can be
used to test the runPermutation
function.
A list
containing three methylRawList
objects. Each
methylRawList
contains the information for one generation
(first entry = first generation, etc..). Each sample information is
stored in a methylRaw
object. There is methylRaw
objects
(6 controls and 6 cases) in each generation.
runPermutation
for running a
permutation analysis, and optionally an observation analysis, using
multi-generational dataset
## Loading dataset data(samplesForTransgenerationalAnalysis) ## Run a permutation analysis runPermutation(methylKitData = samplesForTransgenerationalAnalysis, type = "tiles", nbrPermutations = 2, vSeed = 2332)