getAnnot {methylGSA} | R Documentation |
This function gets CpG IDs and their corresponding gene symbols.
getAnnot(array.type, group)
array.type |
A string. Either "450K" or "EPIC". Default is "450K". |
group |
A string. "all", "body" or "promoter". Default is "all". |
The implementation of the function is modified from .flattenAnn function in missMethyl package.
A data frame contains CpG IDs and gene symbols.
Hansen KD (2016). IlluminaHumanMethylation450kanno.ilmn12.hg19: Annotation for Illumina's 450k methylation arrays. R package version 0.6.0.
Hansen KD (2016). IlluminaHumanMethylationEPICanno.ilm10b2.hg19: Annotation for Illumina's EPIC methylation arrays. R package version 0.6.0, https://bitbucket.com/kasperdanielhansen/Illumina_EPIC.
Phipson B, Maksimovic J and Oshlack A (2015). “missMethyl: an R package for analysing methylation data from Illuminas HumanMethylation450 platform.” Bioinformatics, pp. btv560.