readBisulfFASTA {methVisual} | R Documentation |
Read multiple FASTA file and write bisulfite sequences in separate FASTA files for every bisulfite sequence
readBisulfFASTA(sFileName,sDirName)
sFileName |
String; path to multiple FASTA file |
sDirName |
String; path to directory of created separated FASTA files |
Arie Zackay <arie.zackay@mail.huji.ac.il>, Christine Steinhoff <steinhof@molgen.mpg.de>
## In order to use the following example ## make sure that you have writing permission under R.home() ## directory. If you do not have permission choose your own path. #dir.create(file.path(R.home(component="home"),"/BiqAnalyzer")) BiqAnalyzer_path <- file.path(tempdir(), "BiqAnalyzer") dir.create(BiqAnalyzer_path) makeLocalExpDir(dataPath="/examples/BiqAnalyzer", localDir=BiqAnalyzer_path) readBisulfFASTA(sFileName=file.path(BiqAnalyzer_path,"multiFASTA.fasta"), sDirName=BiqAnalyzer_path)