splicingDistribution {maser}R Documentation

Proportion of events by splicing type.

Description

Proportion of events by splicing type.

Usage

splicingDistribution(events, fdr = 0.05, deltaPSI = 0.1)

Arguments

events

a maser object.

fdr

numeric, FDR (False Discovery Rate) cutoff.

deltaPSI

numeric, absolute minimum PSI (Percent spliced-in) change

Value

a ggplot object.

Examples

path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
splicingDistribution(hypoxia_filt)

[Package maser version 1.0.0 Index]