boxplotColorBias {lumi} | R Documentation |
Plot the Illumina Infinium methylation color bias in terms of boxplot. boxplot of red and green color channel will be plotted side by side
boxplotColorBias(methyLumiM, logMode = TRUE, channel = c("both", "unmethy", "methy", "sum"), grid = TRUE, main = NULL, mar = NULL, verbose = F, subset = NULL, ...)
methyLumiM |
MethyLumiM-class object or eSet-class object, which include methylated and unmethylated probe intensities |
logMode |
whether plot the intensities in log-scale |
channel |
estimate the intensity in different methods |
grid |
whether to add grid on the plot |
main |
title of the plot |
mar |
margin of the plot |
verbose |
whether print verbose information during plot |
subset |
plot subset of randomly selected rows. All data will be plotted if it is NULL. |
... |
other parameters of |
Plot the Illumina Infinium methylation color bias in terms of boxplot. boxplot of red and green color channel will be plotted side by side
Invisibly return TRUE if plot successfully.
Pan DU
See Also as boxplot
and plotColorBias1D
data(example.lumiMethy) boxplotColorBias(example.lumiMethy)