lumiMethyStatus {lumi} | R Documentation |
Estimate the methylation status of individual methylation sites by fitting a two component Gamma mixture model for each sample
lumiMethyStatus(methyLumiM, ...)
methyLumiM |
a MethyLumiM class object |
... |
Other parameters used by |
This function calls methylationCall
and returns the methylation status of individual methylation sites. The methylation status includes: "Unmethy" (unmethylation probability > unmethylation threshold), "Methy" (methylation probability > methylation threshold), or "Margin". The methylation probability is returned as an attribute of "probability".
return a methylation status matrix with "probability" attribute
Pan Du
See Also methylationCall
and gammaFitEM
data(example.lumiMethy) methyCall <- lumiMethyStatus(example.lumiMethy) head(methyCall)