ldblock-package {ldblock} | R Documentation |
Define data structures for linkage disequilibrium measures in populations.
The DESCRIPTION file:
Package: | ldblock |
Title: | data structures for linkage disequilibrium measures in populations |
Version: | 1.12.1 |
Author: | VJ Carey <stvjc@channing.harvard.edu> |
Description: | Define data structures for linkage disequilibrium measures in populations. |
Suggests: | RUnit, BiocGenerics, knitr |
Imports: | Matrix, snpStats, erma, VariantAnnotation, GenomeInfoDb, Rsamtools, GO.db, GenomicFiles (>= 1.13.6), BiocGenerics (>= 0.25.1) |
Depends: | R (>= 3.1), methods, Homo.sapiens |
Maintainer: | VJ Carey <stvjc@channing.harvard.edu> |
License: | Artistic-2.0 |
LazyLoad: | yes |
BiocViews: | genetics, SNP, GWAS, LinkageDisequilibrium |
VignetteBuilder: | knitr |
git_url: | https://git.bioconductor.org/packages/ldblock |
git_branch: | RELEASE_3_8 |
git_last_commit: | 0d7c6a0 |
git_last_commit_date: | 2019-04-03 |
Date/Publication: | 2019-04-03 |
Index of help topics:
downloadPopByChr download hapmap resource with LD estimates expandSnpSet Given a set of SNP identifiers, use LD to expand the set to include linked loci hmld import hapmap LD data and create a structure for its management ldByGene obtain LD statistics in region specified by a gene model ldblock-package data structures for linkage disequilibrium measures in populations ldstruct-class Class '"ldstruct"' s3_1kg Create a URL referencing 1000 genomes content in AWS S3
VJ Carey <stvjc@channing.harvard.edu>
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
# see vignette