ldblock-package {ldblock}R Documentation

data structures for linkage disequilibrium measures in populations

Description

Define data structures for linkage disequilibrium measures in populations.

Details

The DESCRIPTION file:

Package: ldblock
Title: data structures for linkage disequilibrium measures in populations
Version: 1.12.1
Author: VJ Carey <stvjc@channing.harvard.edu>
Description: Define data structures for linkage disequilibrium measures in populations.
Suggests: RUnit, BiocGenerics, knitr
Imports: Matrix, snpStats, erma, VariantAnnotation, GenomeInfoDb, Rsamtools, GO.db, GenomicFiles (>= 1.13.6), BiocGenerics (>= 0.25.1)
Depends: R (>= 3.1), methods, Homo.sapiens
Maintainer: VJ Carey <stvjc@channing.harvard.edu>
License: Artistic-2.0
LazyLoad: yes
BiocViews: genetics, SNP, GWAS, LinkageDisequilibrium
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/ldblock
git_branch: RELEASE_3_8
git_last_commit: 0d7c6a0
git_last_commit_date: 2019-04-03
Date/Publication: 2019-04-03

Index of help topics:

downloadPopByChr        download hapmap resource with LD estimates
expandSnpSet            Given a set of SNP identifiers, use LD to
                        expand the set to include linked loci
hmld                    import hapmap LD data and create a structure
                        for its management
ldByGene                obtain LD statistics in region specified by a
                        gene model
ldblock-package         data structures for linkage disequilibrium
                        measures in populations
ldstruct-class          Class '"ldstruct"'
s3_1kg                  Create a URL referencing 1000 genomes content
                        in AWS S3

Author(s)

VJ Carey <stvjc@channing.harvard.edu>

Maintainer: VJ Carey <stvjc@channing.harvard.edu>

Examples

# see vignette

[Package ldblock version 1.12.1 Index]