ldstruct-class {ldblock} | R Documentation |
"ldstruct"
Manage information about LD statistics as reported by HapMap.
Objects can be created by calls of the form new("ldstruct", ...)
.
ldmat
:Object of class "dsCMatrix"
sparse
representation of statistics
chrom
:Object of class "character"
chromosome
tag in UCSC format
genome
:Object of class "character"
genome tag
allpos
:Object of class "numeric"
coordinates
poptag
:Object of class "character"
hapmap
founder population tag, 'CEU', 'MEX' etc.
statInUse
:Object of class "character"
code
for statistic retrieved, one of 'Dprime', 'LOD', 'R2'
allrs
:Object of class "character"
all
SNP identifiers, sometimes in affy format
signature(x = "ldstruct")
: extract
sparse matrix
showClass("ldstruct")