getDefaultPlotParams {karyoploteR} | R Documentation |
Returns the default parameters for the given plot.type
getDefaultPlotParams(plot.type)
plot.type |
(integer) the required plot type. can be any valid plot type (see |
Given a plot.type, this function returns a list suitable as a valid plot.params
object.
The user can then proceed to change the parameter values as needed and supply the modified
list to the plotKaryotype function.#'
A valid plot.params
object with the default values for the plotting parameters and
ready to be used in the plotKaryotype
pp <- getDefaultPlotParams(plot.type=2) pp #Change the ideogramheight param to create thicker ideograms pp$ideogramheight <- 150 plotKaryotype(genome="hg19", plot.type=2, plot.params=pp)