strandBinCounts {icetea}R Documentation

Perform stranded Bin counts

Description

Perform stranded Bin counts

Usage

strandBinCounts(bam.files, restrictChrs, bam_param, bp_param, window_size,
  sliding = FALSE)

Arguments

bam.files

character vector. BAM files to use

restrictChrs

character vector. chromosomes to use

bam_param

ScanBAMParams

bp_param

BPPARAM

window_size

integer. size of window to use

sliding

logical. perform sliding window counts?

Value

RangedSE object with forward and reverse strand counts


[Package icetea version 1.0.1 Index]