colDataPlotDefaults {iSEE} | R Documentation |
Create default settings for column data plot panels in the iSEE interface.
colDataPlotDefaults(se, number)
se |
A SummarizedExperiment object. |
number |
An integer scalar, specifying the maximum number of column data plots that can be added to the interface. |
Parameters available to column data plots are:
YAxis
:Character, which column of colData(se)
should be shown on the y-axis?
Defaults to the first entry of colData(se)
.
XAxis
:Character, what type of variable should be shown on the x-axis?
Defaults to "None"
, but can also be "Column data"
.
XAxisColData
:Character, which column of colData(se)
should be shown on the x-axis if XAxis="Column data"
?
Defaults to the first entry of colData(se)
.
All column-based parameters described in ?"iSEE point parameters"
are applicable.
All plot-based parameters described in ?"iSEE selection parameters"
are applicable.
A DataFrame containing default settings for parameters of each of number
column data panels.
Aaron Lun
?"iSEE point parameters"
,
?"iSEE selection parameters"
example(SingleCellExperiment, echo=FALSE) # mock up 'sce'. colDataPlotDefaults(sce, n=1)