redDimPlotDefaults {iSEE} | R Documentation |
Create default settings for reduced dimension plot panels in the iSEE interface.
redDimPlotDefaults(se, number)
se |
A SummarizedExperiment object. |
number |
An integer scalar, specifying the maximum number of reduced dimension plots that can be added to the interface. |
Parameters available to reduced dimension plots are:
Type
:Integer, which entry of reducedDims(se)
should be shown?
Defaults to 1, i.e., the first entry.
Alternatively, a string can be supplied containing the name of the reduced dimension field, if reducedDims(se)
has names.
XAxis
:Integer, which component should be shown on the x-axis? Defaults to 1.
YAxis
:Integer, which component should be shown on the y-axis? Defaults to 2.
All column-based parameters described in ?"iSEE point parameters"
are applicable.
All plot-based parameters described in ?"iSEE selection parameters"
are applicable.
A DataFrame containing default settings for parameters of each of number
reduced dimension panels.
Aaron Lun
?"iSEE point parameters"
,
?"iSEE selection parameters"
example(SingleCellExperiment, echo=FALSE) # mock up 'sce'. redDimPlotDefaults(sce, n=1)