convertIdentifiers {graphite}R Documentation

Convert the node identifiers of a pathway.

Description

Converts the node identifiers of pathways.

If the option Ncpus is set to a value larger than 1 and the package parallel is installed, the conversion procedure will automatically use multiple cores.

Usage

convertIdentifiers(x, to)

Arguments

x

can be a list of pathways or a single pathway

to

a string describing the type of the identifier. Can assume the values "entrez", "symbol" or the name of one of the columns provided by an Annotation package (for example, "UNIPROT").

Value

A Pathway object.

See Also

Pathway

Examples

  r <- pathways("hsapiens", "reactome")
  convertIdentifiers(r$`mTOR signalling`, "symbol")

[Package graphite version 1.28.2 Index]