cytoscapePlot {graphite}R Documentation

Plot a pathway graph in Cytoscape

Description

Renders the topology of a pathway as a Cytoscape graph.

Usage

cytoscapePlot(pathway, ..., cy.ver = 3)

Arguments

pathway

a Pathway object.

...

optional arguments forwarded to pathwayGraph.

cy.ver

select a Cytoscape version. Only version 3 is supported in this release.

Details

Requires the RCy3 package.

Value

An invisible list with two items:

graph

the graphNEL object sent to Cytoscape.

suid

the RCy3 network SUID.

See Also

Pathway

pathwayGraph

Examples

## Not run: 
  r <- pathways()
  cytoscapePlot(convertIdentifiers(reactome$`Unwinding of DNA`, "symbol"))

## End(Not run)

[Package graphite version 1.28.2 Index]