genotype.snp.msa {genphen} | R Documentation |
The genotype.snp.msa data is a multiple sequence alignment in Biostrings DNAMultipleAlignment format. It contains 51 DNA sequences, each with 100 sites (SNPs), taken from the publicly available Mouse Hapmap data. We used it in combination with the phenotype.snp data to compute the association between each SNP and the phenotype data.
data("genotype.snp.msa")
DNAMultipleAlignment object with 51 sequences each made of 100 nucleotides (SNPs).
DNAMultipleAlignment object with 51 sequences each made of 100 nucleotides (SNPs).
http://mouse.cs.ucla.edu/mousehapmap/emma.html
data("genotype.snp.msa")