goldCompare {genotypeeval} | R Documentation |
Comparator to gold standard
goldCompare(x, gr, coding, limits.c, limits.uc, percent.c, name.of.gold)
x |
myvcf of interest |
gr |
gold GRanges |
coding |
Coding GRanges |
limits.c |
all confirmed limits |
limits.uc |
all unconfirmed limits |
percent.c |
percent confirmed limit |
name.of.gold |
user readable name |
list with name, logical vector (passed or not), numeric vector of transition transversion in coding and non coding regions in confirmed and non confirmed