convertBed2Introns {genomation}R Documentation

convert a data frame read-in from a bed file to a GRanges object for introns

Description

convert a data frame read-in from a bed file to a GRanges object for introns

Usage

convertBed2Introns(bed.df)

## S4 method for signature 'data.frame'
convertBed2Introns(bed.df)

Arguments

bed.df

a data.frame where column order and content resembles a bed file with 12 columns

Value

GRanges object

Note

one bed track per file is only accepted, the bed files with multiple tracks will cause en error

Examples

file = system.file('extdata/chr21.refseq.hg19.bed', package='genomation')
bed12 = read.table(file)
introns = convertBed2Introns(bed12)
head(introns)


[Package genomation version 1.14.0 Index]