cumlinePlot {geneXtendeR}R Documentation

Produces cumulative line plots.

Description

Makes cumulative differential line plots showing the cumulative sums of the number of genes under peaks at consecutive upstream extension levels.

Usage

cumlinePlot(organism, start, end, by)

Arguments

organism

Object name assigned from readGFF() command.

start

Lower bound of upstream extension.

end

Upper bound of upstream extension.

by

Interval between consecutive extensions.

Value

Creates cumulative differential line plots.

Examples

library(rtracklayer)
rat <- readGFF("ftp://ftp.ensembl.org/pub/release-84/gtf/rattus_norvegicus/Rattus_norvegicus.Rnor_6.0.84.gtf.gz")
fpath <- system.file("extdata", "somepeaksfile.txt", package="geneXtendeR")
peaksInput(fpath)
cumlinePlot(rat, 1000, 3000, 100)



[Package geneXtendeR version 1.8.0 Index]