geNetClassifier-package {geNetClassifier}R Documentation

classify diseases and build associated gene networks using gene expression profiles

Description

Comprehensive package to automatically train a multi-class SVM classifier based on gene expression data. Provides transparent selection of gene markers, their coexpression networks, and an interface to query the classifier.

Details

Package: geNetClassifier
Type: Package
Version: 1.0
Date: 2013-02-28
License: GPL (>=2)
LazyLoad: yes
Depends: R (>= 2.10.1), Biobase (>= 2.5.5), EBarrays, minet, methods
Imports: e1071, ipred, graphics
Suggests: leukemiasEset
Enhances: RColorBrewer, igraph

Author(s)

Sara Aibar, Celia Fontanillo and Javier De Las Rivas
Bioinformatics and Functional Genomics Group. Centro de Investigacion del Cancer (CIC-IBMCC, CSIC/USAL). Salamanca. Spain.
Maintainer: Sara Aibar <saibar@usal.es>

See Also

Main functions included in this package:

Query stats funtions:

Plots and genes info:

Classes:

Related data sets:


[Package geNetClassifier version 1.22.0 Index]