leukemiasClassifier {geNetClassifier} | R Documentation |
A sample of the object returned by geNetClassifier. Containins the classifier, the network, and the gene statistics.
data(leukemiasClassifier)
GeNetClassifierReturn object
data(leukemiasClassifier) # Global view of the object and its structure: leukemiasClassifier names(leukemiasClassifier) # Call and acess to the classifier: leukemiasClassifier@call leukemiasClassifier@classifier # Genes used for training the classifier: numGenes(leukemiasClassifier@classificationGenes) leukemiasClassifier@classificationGenes genesDetails(leukemiasClassifier@classificationGenes) # Generalization Error estimated by cross-validation: # leukemiasClassifier@generalizationError # overview(leukemiasClassifier@generalizationError) # List of Networks by classes: leukemiasClassifier@genesNetwork # Access to the nodes or edges of each network: getEdges(leukemiasClassifier@genesNetwork$AML)[1:5,] getNodes(leukemiasClassifier@genesNetwork$AML)[1:50] # Global genes ranking: leukemiasClassifier@genesRanking numGenes(leukemiasClassifier@genesRanking) numSignificantGenes(leukemiasClassifier@genesRanking) # getTopRanking(leukemiasClassifier@genesRanking, 10)