getSnpM {funtooNorm} | R Documentation |
Computes M values after normalization of SNP data.
getSnpM(object) ## S4 method for signature 'SampleSet' getSnpM(object)
object |
of class SampleSet |
a matrix containing M values, log2(Meth/Unmeth), after normalization for SNP data
SampleSet
: Computes M values, log2(Meth/Unmeth), for normalized
SNP data
require(minfiData) pData(RGsetEx)$cell_type <- rep(c("type1","type2"),3) mySampleSet=fromRGChannelSet(RGsetEx) snp=getSnpM(funtooNorm(mySampleSet))