wagscreen {epiNEM}R Documentation

Example data: epiNEM results for the Wageningen et al., 2010 knock-out screen "http://www.holstegelab.nl/publications/GSTF_geneticinteractions/ downloads/del_mutants_limma.txt"

Description

The data consists of a list of matrices with the likelihoods (ll) for each analysed triple of signalling genes and the inferred logic (logic) for each triple. The signalling genes or modulators C are the rows and the signalling genes from the double knock-downs are in the columns. For details see the vignette.

Examples

data(wagscreen)

[Package epiNEM version 1.6.0 Index]