dSimer-package {dSimer} | R Documentation |
dSimer is an R package which provides computation of nine methods for measuring disease-disease similarity, including a standard cosine similarity measure and eight function-based methods. The disease similarity matrix obtained from these nine methods can be visualized through heatmap and network. Biological data widely used in disease-disease associations study are also provided by dSimer.
Package: | dSimer |
Type: | Package |
Version: | 1.1.0 |
Date: | 12-10-2015 |
biocViews: | Software, Visualization, Network |
Depends: | R (>= 3.3.0), igraph (>= 1.0.1) |
Imports: | stats, Rcpp (>= 0.11.3), ggplot2, reshape2, GO.db, AnnotationDbi, org.Hs.eg.db, graphics |
Suggests: | knitr, rmarkdown, BiocStyle |
LinkingTo: | Rcpp |
License: | GPL (>= 2) |
Min Li, Peng Ni