HypergeometricTest {dSimer} | R Documentation |
given disease-gene associations and go-gene associations, return disease-go associations by using hypergeometric test and fdr mulitiple testing
HypergeometricTest(d2g, go2g, method = "BH", cutoff = 0.05)
d2g |
a list of disease-gene associations |
go2g |
a list of GOterm-gene associations |
method |
multiple testing method, the same as parameter in method p.adjust |
cutoff |
multiple testing cut off value |
a list of disease-GO term associations
Peng Ni, Min Li
PSB
, Sun_function
,
get_GOterm2GeneAssos
## see more examples in function PSB or Sun_function data(d2go_sample) data(go2g_sample) data(d2g_fundo_symbol) HypergeometricTest(d2g_fundo_symbol[names(d2go_sample)],go2g_sample)