GRanges2ucsc-methods {compEpiTools}R Documentation

A GRanges method to convert ranges information into UCSC format

Description

Chr assignments, start and end positions are converted into UCSC format, in the form chr1:100-500

Methods

To be used in this form:

GRanges2ucsc(Object)

where Object is a GRanges

Examples

gr <- GRanges(Rle(c('chr1','chr2')), 
	ranges=IRanges(start=c(1e7, 2e7), end=c(1e7+19, 2e7+19)))
GRanges2ucsc(gr)

[Package compEpiTools version 1.16.0 Index]