plot.positionprofile {cobindR} | R Documentation |
plot.positionprofile provides position-wise profile plot over total number of predicted TFBS for each PWM over all input sequences. Windowing is used to provide a smoother appreance, the window size can be adjusted with the window parameter.
## S4 method for signature 'cobindr' plot.positionprofile(x, wind.len = 50)
x |
an object of the class "cobindr", which will hold all necessary information about the sequences and the hits. |
wind.len |
integer, defining the length of the window for counting the hits. |
Robert Lehmann <r.lehmann@biologie.hu-berlin.de>