pairs {cobindR} | R Documentation |
motif hit pairs in the foreground sequences
## S4 method for signature 'configuration' pairs(x) ## S4 replacement method for signature 'configuration,character' pairs(x) <- value ## S4 method for signature 'cobindr' pairs(x) ## S4 replacement method for signature 'cobindr,data.frame' pairs(x) <- value
x |
a cobindR configuration object |
value |
for a configuration object, pairs is a character specifying the motif pairs which should be considered. for a cobindR object, pairs is a data.frame holding the detected motif pairs. |
pairs (character)
Rob Lehmann <r.lehmann@biologie.hu-berlin.de>
id
,experiment_description
,sequence_source
,sequence_origin
,sequence_type
,bg_sequence_source
,bg_sequence_origin
,bg_sequence_type
,species
,downstream
,upstream
,max_distance
,pairs
,pfm_path
,threshold
,fdrThreshold
,path
,mart
,pValue
cfg <- cobindRConfiguration() pairs(cfg)