get.bindingsite.ranges {cobindR} | R Documentation |
Function converts predicted binding sites into a GRanges object (package: GenomicFeatures). This allows for easy interaction with other tools as well as output of different formats (bed, gff).
get.bindingsite.ranges(x, ...)
x |
An object of the class "cobindr", which will hold the predicted binding site locations. |
... |
optional additional parameters |
A GRanges object holding the positions of all predicted transcription factor binding sites relative to the input sequence.
Robert Lehmann <r.lehmann@biologie.hu-berlin.de>
get.pairs write.bindingsites write.bindingsites.table
# export(get.bindingsite.ranges(runObj), "tfbs_hits.gff3")