pseudocount {cobindR}R Documentation

pseudocount of cobindR configuration object

Description

pseudocount of cobindR configuration object. Set to 10 as default

Usage

## S4 method for signature 'configuration'
pseudocount(x)
## S4 replacement method for signature 'configuration,character'
pseudocount(x) <- value

Arguments

x

a cobindR configuration object

value

pseudocount for detrending analysis, i.e. the default number in each distance bin.

Value

pseudocount (numeric)

Author(s)

Rob Lehmann <r.lehmann@biologie.hu-berlin.de>

See Also

id,experiment_description,sequence_source,sequence_origin,sequence_type,bg_sequence_source,bg_sequence_origin,bg_sequence_type,species,downstream,upstream,max_distance,pairs,pfm_path,threshold,fdrThreshold,path,mart,pseudocount,pValue

Examples

cfg <- cobindRConfiguration()
pseudocount(cfg)

[Package cobindR version 1.20.0 Index]