simulateUnivariate {chromstaR} | R Documentation |
Simulate known states, read counts and read coordinates using a univariate Hidden Markov Model with three states ("zero-inflation", "unmodified" and "modified").
simulateUnivariate(bins, transition, emission, fragLen = 50)
bins |
A |
transition |
A matrix with transition probabilities. |
emission |
A data.frame with emission distributions (see |
fragLen |
Length of the simulated read fragments. |
A list
with entries $bins containing the simulated states and read count, $reads with simulated read coordinates and $transition and $emission.