create_fusion_report {chimeraviz} | R Documentation |
This function will create a html report with an overplot and a sortable, searchable table with the fusion data.
create_fusion_report(fusions, output_filename, quiet = TRUE)
fusions |
A list of Fusion objects. |
output_filename |
Output html-file filename. |
quiet |
Parameter passed to rmarkdown::render() to toggle its output. |
Creates a html report with an overplot and a sortable, searchable table with the fusion data.
# Load data defuse833ke <- system.file( "extdata", "defuse_833ke_results.filtered.tsv", package="chimeraviz") fusions <- import_defuse(defuse833ke, "hg19", 3) # Temporary file to store the report output_filename <- tempfile( pattern = "fusionReport", fileext = ".html", tmpdir = tempdir()) # Create report create_fusion_report(fusions, output_filename)