import_ericscript {chimeraviz}R Documentation

Import results from a EricScript run into a list of Fusion objects.

Description

A function that imports the results from a EricScript run into a list of Fusion objects.

Usage

import_ericscript(filename, genome_version, limit)

Arguments

filename

Filename for the EricScript results file.

genome_version

Which genome was used in mapping (hg19, hg38, etc.).

limit

A limit on how many lines to read.

Value

A list of Fusion objects.

Examples

ericscriptData <- system.file(
  "extdata",
  "ericscript_SRR1657556.results.total.tsv",
  package = "chimeraviz")
fusions <- import_ericscript(ericscriptData, "hg19", 3)
# This should import a list of 3 fusions described in Fusion objects.


[Package chimeraviz version 1.8.5 Index]