create_fusion_report {chimeraviz}R Documentation

Create a Fusion Report

Description

This function will create a html report with an overplot and a sortable, searchable table with the fusion data.

Usage

create_fusion_report(fusions, output_filename, quiet = TRUE)

Arguments

fusions

A list of Fusion objects.

output_filename

Output html-file filename.

quiet

Parameter passed to rmarkdown::render() to toggle its output.

Value

Creates a html report with an overplot and a sortable, searchable table with the fusion data.

Examples

# Load data
defuse833ke <- system.file(
  "extdata",
  "defuse_833ke_results.filtered.tsv",
  package="chimeraviz")
fusions <- import_defuse(defuse833ke, "hg19", 3)
# Temporary file to store the report
output_filename <- tempfile(
  pattern = "fusionReport",
  fileext = ".html",
  tmpdir = tempdir())
# Create report
create_fusion_report(fusions, output_filename)


[Package chimeraviz version 1.8.5 Index]