getGenProfs {canceR} | R Documentation |
Get Genetic Profile from selected Studies
getGenProfs()
dataframe with genetic profil
cgds<-CGDS("http://www.cbioportal.org/") # Get list of cancer studies at server Studies <- getCancerStudies(cgds)[,2] # Get available case lists (collection of samples) for a given cancer study mycancerstudy <- getCancerStudies(cgds)[2,1] mycaselist <- getCaseLists(cgds,mycancerstudy)[1,1] # Get available genetic profiles mygeneticprofile <- getGeneticProfiles(cgds,mycancerstudy)[4,1] ## Not run: getGenProfs() ## End(Not run)