tis_set {brainImageR}R Documentation

List of tissues that support a given region in the brain plot

Description

Tissues that support brain area. Opposite=tis_in_region()'

Usage

tis_set(composite, area.name, slice)

Arguments

composite

object returned from SpatialEnrichment or CreateBrain

area.name

abreviation of the brain area of interest.

slice

section of the brain to query (1-10)

Value

all areas supported by the tissue

Examples

#brainImageR:::loadworkspace()
##Load in a gene set
data(vth)
##calculate spatial enrichment
#composite <- SpatialEnrichment(vth, reps = 20, refset = "developing")
#get the set of tissues that are present within a given region
#tis_set(composite, area.name = "Pu", slice = 6)

[Package brainImageR version 1.0.0 Index]