GetGenes {brainImageR} | R Documentation |
GetGenes
returns the genes that are expressed within a given tissue
GetGenes(genes, composite, tissue_abrev = NULL)
genes |
Query gene list. |
composite |
Result from SpatialEnrichment |
tissue_abrev |
The tissue of interest. |
Gene overlap between query and tissue of interest
#brainImageR:::loadworkspace() ##First put together a gene list, or load in the default vth dataset data(vth) ##Calculate the spatial enrichment. #composite <- SpatialEnrichment(vth, reps = 20, refset = "developing") ##Ask which genes are present in any given tissue. #available_areanames(composite, slice = 4) #vth_in_VZ <- GetGenes(vth, composite, tissue_abrev = "VZ")