GetGenes {brainImageR}R Documentation

GenGenes

Description

GetGenes returns the genes that are expressed within a given tissue

Usage

GetGenes(genes, composite, tissue_abrev = NULL)

Arguments

genes

Query gene list.

composite

Result from SpatialEnrichment

tissue_abrev

The tissue of interest.

Value

Gene overlap between query and tissue of interest

Examples

#brainImageR:::loadworkspace()
##First put together a gene list, or load in the default vth dataset
data(vth)
##Calculate the spatial enrichment.
#composite <- SpatialEnrichment(vth, reps = 20, refset = "developing")
##Ask which genes are present in any given tissue.
#available_areanames(composite, slice = 4)
#vth_in_VZ <- GetGenes(vth, composite, tissue_abrev = "VZ")


[Package brainImageR version 1.0.0 Index]