available_areanames {brainImageR}R Documentation

List of areas that are present in a plotted brain slice

Description

provides all brain areas within a slice for a refset.

Usage

available_areanames(composite, slice = NULL)

Arguments

composite

Object from either SpatialEnrichment or CreateBrain

slice

Section of the brain to be queried

Value

all areas present in the brain section of interest

Examples

#brainImageR:::loadworkspace()
##Load in a gene set
data(vth)
##calculate spatial enrichment
#composite <- SpatialEnrichment(vth, reps = 20, refset = "developing")
#available_areanames(composite, slice = 5)


[Package brainImageR version 1.0.0 Index]