testEnrich {brainImageR}R Documentation

Calculate significance of gene set enrichment

Description

testEnrich test the enrichment of the observed enrichment

Usage

testEnrich(composite, method = c("fisher", "bootstrap"))

Arguments

composite

Comp object returned from SpatialEnrichment.

method

character either "bootstrap" or "fisher"

Value

spatiotemporal prediction

Examples

#brainImageR:::loadworkspace()
##First put together a gene list, or load in the default vth dataset
data(vth)
##Calculate the spatial enrichment.
#composite <- SpatialEnrichment(vth, reps = 20, refset = "developing")
##Calculate the significance estimates
#boot <- testEnrich(composite)
#boot <- boot[order(boot$FC, decreasing=TRUE),]
#head(boot)


[Package brainImageR version 1.0.0 Index]