show,biosign-method {biosigner} | R Documentation |
Prints the selected features and the accuracies of the classifiers.
## S4 method for signature 'biosign' show(object)
object |
An S4 object of class |
Invisible.
Philippe Rinaudo and Etienne Thevenot (CEA)
## loading the diaplasma dataset data(diaplasma) attach(diaplasma) ## restricting to a smaller dataset for this example featureSelVl <- variableMetadata[, "mzmed"] >= 490 & variableMetadata[, "mzmed"] < 500 dataMatrix <- dataMatrix[, featureSelVl] variableMetadata <- variableMetadata[featureSelVl, ] ## signature selection for all 3 classifiers ## a bootI = 5 number of bootstraps is used for this example ## we recommend to keep the default bootI = 50 value for your analyzes set.seed(123) diaSign <- biosign(dataMatrix, sampleMetadata[, "type"], bootI = 5) diaSign detach(diaplasma)